Validating the AMRFINder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates

Michael Feldgarden; Vyacheslav Brover; Daniel H. Haft; Arjun B. Prasad; Douglas J. Slotta; Igor Tolstoy; Gregory H. Tyson; Shaohua Zhao; Chih Hao Hsu; Patrick F. McDermott; Daniel A. Tadesse; Cesar Morales; Mustafa Simmons; Glenn Tillman; Jamie Wasilenko; Jason P. Folster; William Klimke

doi:10.1128/AAC.00483-19

Validating the AMRFINder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates

Michael Feldgarden
, Vyacheslav Brover
, Daniel H. Haft
, Arjun B. Prasad
, Douglas J. Slotta
, Igor Tolstoy
, Gregory H. Tyson
, Shaohua Zhao
, Chih Hao Hsu
, Patrick F. McDermott
, Daniel A. Tadesse
, Cesar Morales
, Mustafa Simmons
, Glenn Tillman
, Jamie Wasilenko
, Jason P. Folster
, William Klimke

Research output: Contribution to journal › Article › peer-review

Original language	English
Article number	e0048319
Journal	Antimicrobial Agents and Chemotherapy
Volume	63
Issue number	11
DOIs	https://doi.org/10.1128/AAC.00483-19
State	Published - 2019
Externally published	Yes

ASJC Scopus Subject Areas

Pharmacology
Pharmacology (medical)
Infectious Diseases

Keywords

Analytical software
Antimicrobial resistance
Campylobacter
Computational biology
Database
Foodborne pathogens
Genomics
Salmonella
Surveillance

Access to Document

10.1128/AAC.00483-19

Cite this

Feldgarden, M., Brover, V., Haft, D. H., Prasad, A. B., Slotta, D. J., Tolstoy, I., Tyson, G. H., Zhao, S., Hsu, C. H., McDermott, P. F., Tadesse, D. A., Morales, C., Simmons, M., Tillman, G., Wasilenko, J., Folster, J. P., & Klimke, W. (2019). Validating the AMRFINder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates. Antimicrobial Agents and Chemotherapy, 63(11), Article e0048319. https://doi.org/10.1128/AAC.00483-19

Feldgarden, M, Brover, V, Haft, DH, Prasad, AB, Slotta, DJ, Tolstoy, I, Tyson, GH, Zhao, S, Hsu, CH, McDermott, PF, Tadesse, DA, Morales, C, Simmons, M, Tillman, G, Wasilenko, J, Folster, JP & Klimke, W 2019, 'Validating the AMRFINder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates', Antimicrobial Agents and Chemotherapy, vol. 63, no. 11, e0048319. https://doi.org/10.1128/AAC.00483-19

@article{fd9c79877f8f437b9bc810669d53a140,

title = "Validating the AMRFINder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates",

keywords = "Analytical software, Antimicrobial resistance, Campylobacter, Computational biology, Database, Foodborne pathogens, Genomics, Salmonella, Surveillance",

author = "Michael Feldgarden and Vyacheslav Brover and Haft, \{Daniel H.\} and Prasad, \{Arjun B.\} and Slotta, \{Douglas J.\} and Igor Tolstoy and Tyson, \{Gregory H.\} and Shaohua Zhao and Hsu, \{Chih Hao\} and McDermott, \{Patrick F.\} and Tadesse, \{Daniel A.\} and Cesar Morales and Mustafa Simmons and Glenn Tillman and Jamie Wasilenko and Folster, \{Jason P.\} and William Klimke",

year = "2019",

doi = "10.1128/AAC.00483-19",

language = "English",

volume = "63",

journal = "Antimicrobial Agents and Chemotherapy",

issn = "0066-4804",

number = "11",

}

TY - JOUR

T1 - Validating the AMRFINder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates

AU - Feldgarden, Michael

AU - Brover, Vyacheslav

AU - Haft, Daniel H.

AU - Prasad, Arjun B.

AU - Slotta, Douglas J.

AU - Tolstoy, Igor

AU - Tyson, Gregory H.

AU - Zhao, Shaohua

AU - Hsu, Chih Hao

AU - McDermott, Patrick F.

AU - Tadesse, Daniel A.

AU - Morales, Cesar

AU - Simmons, Mustafa

AU - Tillman, Glenn

AU - Wasilenko, Jamie

AU - Folster, Jason P.

AU - Klimke, William

PY - 2019

Y1 - 2019

KW - Analytical software

KW - Antimicrobial resistance

KW - Campylobacter

KW - Computational biology

KW - Database

KW - Foodborne pathogens

KW - Genomics

KW - Salmonella

KW - Surveillance

UR - https://www.scopus.com/pages/publications/85073764541

UR - https://www.scopus.com/pages/publications/85073764541#tab=citedBy

U2 - 10.1128/AAC.00483-19

DO - 10.1128/AAC.00483-19

M3 - Article

C2 - 31427293

AN - SCOPUS:85073764541

SN - 0066-4804

VL - 63

JO - Antimicrobial Agents and Chemotherapy

JF - Antimicrobial Agents and Chemotherapy

IS - 11

M1 - e0048319

ER -

Validating the AMRFINder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates

ASJC Scopus Subject Areas

Keywords

Access to Document

Other files and links

Cite this