Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning

Maude M. David; Christine Tataru; Quintin Pope; Lydia J. Baker; Mary K. English; Hannah E. Epstein; Austin Hammer; Michael Kent; Michael J. Sieler; Ryan S. Mueller; Thomas J. Sharpton; Fiona Tomas; Rebecca Vega Thurber; Xiaoli Z. Fern

doi:10.1128/msystems.01058-21

Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning

Maude M. David, Christine Tataru, Quintin Pope, Lydia J. Baker, Mary K. English, Hannah E. Epstein, Austin Hammer, Michael Kent, Michael J. Sieler, Ryan S. Mueller, Thomas J. Sharpton, Fiona Tomas, Rebecca Vega Thurber, Xiaoli Z. Fern

Research output: Contribution to journal › Article › peer-review

Original language	English
Article number	e01058-21
Journal	mSystems
Volume	7
Issue number	1
DOIs	https://doi.org/10.1128/msystems.01058-21
State	Published - Jan 2022
Externally published	Yes

ASJC Scopus Subject Areas

Microbiology
Physiology
Biochemistry
Ecology, Evolution, Behavior and Systematics
Modeling and Simulation
Molecular Biology
Genetics
Computer Science Applications

Keywords

Deep learning
Embeddings
Machine learning
Microbial ecology

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10.1128/msystems.01058-21

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David, M. M., Tataru, C., Pope, Q., Baker, L. J., English, M. K., Epstein, H. E., Hammer, A., Kent, M., Sieler, M. J., Mueller, R. S., Sharpton, T. J., Tomas, F., Thurber, R. V., & Fern, X. Z. (2022). Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning. mSystems, 7(1), Article e01058-21. https://doi.org/10.1128/msystems.01058-21

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title = "Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning",

keywords = "Deep learning, Embeddings, Machine learning, Microbial ecology",

author = "David, \{Maude M.\} and Christine Tataru and Quintin Pope and Baker, \{Lydia J.\} and English, \{Mary K.\} and Epstein, \{Hannah E.\} and Austin Hammer and Michael Kent and Sieler, \{Michael J.\} and Mueller, \{Ryan S.\} and Sharpton, \{Thomas J.\} and Fiona Tomas and Thurber, \{Rebecca Vega\} and Fern, \{Xiaoli Z.\}",

note = "Publisher Copyright: Copyright {\textcopyright} 2022 David et al.",

year = "2022",

month = jan,

doi = "10.1128/msystems.01058-21",

language = "English",

volume = "7",

journal = "mSystems",

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TY - JOUR

T1 - Revealing General Patterns of Microbiomes That Transcend Systems

T2 - Potential and Challenges of Deep Transfer Learning

AU - David, Maude M.

AU - Tataru, Christine

AU - Pope, Quintin

AU - Baker, Lydia J.

AU - English, Mary K.

AU - Epstein, Hannah E.

AU - Hammer, Austin

AU - Kent, Michael

AU - Sieler, Michael J.

AU - Mueller, Ryan S.

AU - Sharpton, Thomas J.

AU - Tomas, Fiona

AU - Thurber, Rebecca Vega

AU - Fern, Xiaoli Z.

PY - 2022/1

Y1 - 2022/1

KW - Deep learning

KW - Embeddings

KW - Machine learning

KW - Microbial ecology

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UR - https://www.scopus.com/inward/citedby.url?scp=85123785278&partnerID=8YFLogxK

U2 - 10.1128/msystems.01058-21

DO - 10.1128/msystems.01058-21

M3 - Article

AN - SCOPUS:85123785278

SN - 2379-5077

VL - 7

JO - mSystems

JF - mSystems

IS - 1

M1 - e01058-21

ER -

Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning

ASJC Scopus Subject Areas

Keywords

Access to Document

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